Protein Mini Muffins
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These Protein Mini Muffins are soft, lightly sweet, and packed with protein for a nutritious snack or breakfast on the go. Made with Kodiak Cakes mix, flax seeds, and mini chocolate chips, they’re deliciously satisfying while keeping you fueled throughout the day.
If you love high-protein treats, try my Healthy Biscoff Protein Balls next.

Now, let’s talk about why protein mini muffins are the ultimate snack-time hero. First of all, they’re small but mighty! Despite their petite size, they’re loaded with high-quality protein to keep you full, energized, and ready to take on the day.
Say goodbye to those mid-morning hunger pangs or that dreaded afternoon slump—these muffins have got you covered! They come in a variety of flavors, from classic chocolate chip to scrumptious banana walnut, meaning there’s a perfect pick for every palate.
What You’ll Love About This Recipe
Recipe Ingredients
You’ll need the following ingredients to make these protein mini muffins:

Ingredient Notes
Pancake Mix: I used Kodiak Cakes buttermilk power cakes waffle and flapjack mix. This protein-packed base makes the muffins hearty and satisfying.
Ground Flaxseed: It boosts fiber and adds extra nutrition.
Brown Sugar: It Provides a hint of sweetness; swap with coconut sugar if preferred.
Milk: Use regular milk or substitute with almond or oat milk for a dairy-free option.
Vanilla Extract: Enhances flavor with a warm, aromatic sweetness.
Vegetable Oil: Could also sawp with coconut oil or melted butter.
Mini Chocolate Chips: I suggest using mini chocolate chips since the muffins are small and the minis help ensure chocolate in every bite. That said, regular chocolate chips will work just fine too.
Recipe Variations
Berry Boost: Swap the chocolate chips for fresh or dried blueberries.
Nutty Twist: Add chopped walnuts or pecans for extra crunch.
How to Make Protein Mini Muffins: Step by Step
Here are quick visual instructions. Be sure to check out the full instructions with the exact ingredients in the printable recipe card below.

Step 1: Whisk together the Kodiak mix, flax seeds, brown sugar, and baking powder.

Step 2: Add the milk, egg, vanilla, and vegetable oil. Whisk to combine.

Step 3: Fold in the mini chocolate chips. Then, fill each mini muffin cup with batter.

Step 4: Preheat the oven to 350°F and grease a mini muffin pan with nonstick cooking spray. Bake for 15 to 18 minutes until a toothpick inserted into the center comes clean.

Step 5: Allow the muffins to cool completely in the pan before serving.
Recipe Tips and Tricks
Do not over-mix. Stir just until combined to keep the muffins light and fluffy.
Fill muffin cups evenly for consistent baking results.
These muffins store well in an airtight container for up to 3 days at room temperature or a week in the fridge.
Frequently Asked Questions
Yes. Any pancake or protein baking mix should work, but it may alter the texture slightly.
You can keep them in an airtight container at room temperature for 3 days, refrigerate for up to a week, or freeze them for up to 3 months.
Absolutely. You can swap them for nuts or dried fruit or leave them out altogether.

I hope you love these Protein Mini Muffins. Please consider leaving a star 🌟🌟🌟🌟🌟 rating in the recipe card below. Thank you so much!
More Muffins Recipes

Protein Mini Muffins
Ingredients
- 1 cup Kodiak Cakes Buttermilk Power Cakes Waffle and Flapjack Mix
- 1/4 cup flax seed ground
- 1/3 cup brown sugar
- 1 teaspoon baking powder
- 1 cup milk
- 1 egg
- 1 teaspoon vanilla extract
- 1/2 cup vegetable oil
- 1 cup mini chocolate chips
Instructions
- Whisk together the Kodiak mix, flax seeds, brown sugar, and baking powder.
- Add the milk, egg, vanilla, and vegetable oil. Whisk to combine.
- Fold in the mini chocolate chips. Then, fill each mini muffin cup full of batter.
- Preheat the oven to 350°F and grease a mini muffin pan with nonstick cooking spray. Bake for 15 to 18 minutes until a toothpick inserted into the center comes clean.
- Allow the muffins to cool completely in the pan before serving.
The nutritional details for recipes are estimated using MyFitnessPal and can vary with different products, measurement accuracy, and source reliability. We aim to provide accurate information but cannot guarantee the precise accuracy of the nutritional data




